Development of a molecular genetics and cell biology toolbox for the filamentous fungus Diplodia sapinea

dc.contributor.authorOostlander, Anne Geertje
dc.contributor.authorBrodde, Laura
dc.contributor.authorVon Bargen, Miriam
dc.contributor.authorSlippers, Bernard
dc.contributor.authorBecker, Yvonne
dc.contributor.authorBrandt, Ulrike
dc.contributor.authorKlawonn, Frank
dc.contributor.authorGrobler, Christiaan
dc.contributor.authorWell, Lucas
dc.contributor.authorStenlid, Jan
dc.contributor.authorOliva, Jonas
dc.contributor.authorElfstrand, Malin
dc.contributor.authorFleissner, Andre
dc.date.accessioned2025-05-23T11:07:51Z
dc.date.available2025-05-23T11:07:51Z
dc.date.issued2024-12-27
dc.descriptionSUPPORTING INFORMATION : FILE S1. Laboratory protocol for the Agrobacterium-mediated transformation of Diplodia sapinea. TABLE S1. Oligonucleotides used in this study. MOVIE S1. Video of merged brightfield and fluorescence microscopy of D. sapinea expressing the H2B-mcherry. Merged brightfield and fluorescence microscopy of the transformed D. sapinea strain GD1_14 on VMM, expressing the H2B-mcherry fusion protein. The H2BmCherry fluorescence is triggered by excitation at 580 nm. RAW IMAGES S1. Original images of diagnostic PCRs and Southern blot image supporting Fig 2. PCR analysis of eight transformed strains was performed using primer pairs (A) 2245/2246 and (B) 2247/2248 to confirm homologous integration of the expression cassette at the niaD gene locus. (C) Southern blot analysis of eight strains transformed with Agrobacterium sp. AGL-1_AO11 was performed using HindIII-digested DNA from transformants and wild type (WT), with the entire T-DNA fragment as a probe. The Thermo Scientific GeneRuler 1 kb DNA Ladder was used as a marker in all gels.
dc.description.abstractDiplodia sapinea (Fr.) Fuckel is a widespread fungal pathogen affecting conifers worldwide. Infections can lead to severe symptoms, such as shoot blight, canker, tree death, or blue stain in harvested wood, especially in Pinus species. Its impact on forest health is currently intensified, likely due to climate change, posing an increasing threat to global ecosystems and forestry. Despite extensive and successful research on this pathogen system, fundamental questions about its biology and plant-associated lifestyle remain unanswered. Addressing these questions will necessitate the development of additional experimental tools, including protocols for molecular genetics and cell biology approaches. In this study, we continue to address this need by establishing an Agrobacterium-mediated genetic transformation protocol for D. sapinea, enabling targeted mutagenesis and heterologous gene expression. We utilized this methodology to localize the histone H2B by tagging it with the fluorescent protein mCherry. Additionally, we established a time- and space-efficient laboratory-scale infection assay using two-week-old Pinus sylvestris seedlings. Integrating these tools in a proof-of-concept study enabled the visualization of D. sapinea in planta growth through the fluorescently labeled reporter strain.
dc.description.departmentForestry and Agricultural Biotechnology Institute (FABI)
dc.description.departmentBiochemistry, Genetics and Microbiology (BGM)
dc.description.librarianam2025
dc.description.sdgSDG-03: Good health and well-being
dc.description.sponsorshipThe University of Pretoria’s participation in the European Union’s Horizon 2020 research and innovation program (RISE) under the Marie Skłodowska-Curie grant agreement No. 101008129, project acronym “Mycobiomics”, and the Ellen and Tage Westins foundation.
dc.description.urihttps://journals.plos.org/plosone/
dc.identifier.citationOostlander, A.G., Brodde, L, Von Bargen, M,, Slippers, B., Becker, Y., Brandt, U., et al. (2024) Development of a molecular genetics and cell biology toolbox for the filamentous fungus Diplodia sapinea. PLoS ONE 19(12): e0308794. https://doi.org/10.1371/journal.pone.0308794.
dc.identifier.issn1932-6203 (online)
dc.identifier.other10.1371/journal.pone.0308794
dc.identifier.urihttp://hdl.handle.net/2263/102496
dc.language.isoen
dc.publisherPublic Library of Science
dc.rights© 2024 Oostlander et al. This is an open access article distributed under the terms of the Creative Commons Attribution License.
dc.subjectInfections
dc.subjectDiplodia sapinea
dc.subjectPinus species
dc.subjectClimate change
dc.titleDevelopment of a molecular genetics and cell biology toolbox for the filamentous fungus Diplodia sapinea
dc.typeArticle

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