Divergence of active site motifs among different classes of Populus glutaredoxins results in substrate switches

dc.contributor.authorXu, Hui
dc.contributor.authorLi, Zhen
dc.contributor.authorJiang, Peng-Fei
dc.contributor.authorZhao, Li
dc.contributor.authorQu, Chang
dc.contributor.authorVan de Peer, Yves
dc.contributor.authorLiu, Yan-Jing
dc.contributor.authorZeng, Qing-Yin
dc.date.accessioned2023-07-17T08:25:24Z
dc.date.available2023-07-17T08:25:24Z
dc.date.issued2022-04
dc.descriptionDATA AVAILABILITY STATEMENT : Sequencing data of P. trichocarpa GRX genes can be found in the GenBank database under the accession numbers listed in Table S1. Sequencing data of other 13 land plant GRX genes can be found in the Phytozome and congenie databases under the accession numbers listed in Table S2. All the other relevant data can be found within the paper and its supporting information.en_US
dc.descriptionSUPPORTING INFORMATION : FIGURE S1. Genomic localization of full-length Populus GRX genes. FIGURE S2. Subcellular localizations of Populus GRX proteins. FIGURE S3. SDS-PAGE of Populus GRXs and mutants of PtGRXB4. FIGURE S4. Predicted structure of PtGRXB4 in complex with its substrate by molecular docking. FIGURE S5. Modified pCAMBIA1302 vector. FIGURE S6. Modified pMAL-c5x vector.en_US
dc.descriptionTABLE S1. Full-length GRX genes identified from the Populus trichocarpa genome. TABLE S2. Full-length GRXs identified from 13 land plant species. TABLE S3. Enzymatic activities of PtGRXB4 with different tags. TABLE S4. Enzymatic activities of PtGRXB4 and its mutants shown in Figure 7a. TABLE S5. Primers used to construct the vectors for analysis of the subcellular localization of Populus GRXs. TABLE S6. Primers used to construct protein expression vectors for Populus GRXs. TABLE S7. Primers used to amplify Populus mutated GRX genes and construct mutated protein expression vectors.en_US
dc.descriptionDATA S1. Sequence alignment used to construct the phylogenetic tree in Figure 1. DATA S2. Sequence alignment used to construct the phylogenetic tree in Figure 2a.en_US
dc.description.abstractEnzymes are essential components of all biological systems. The key characteristics of proteins functioning as enzymes are their substrate specificities and catalytic efficiencies. In plants, most genes encoding enzymes are members of large gene families. Within such families, the contributions of active site motifs to the functional divergence of duplicate genes have not been well elucidated. In this study, we identified 41 glutaredoxin (GRX) genes in the Populus trichocarpa genome. GRXs are ubiquitous enzymes in plants that play important roles in developmental and stress tolerance processes. In poplar, GRX genes were divided into four classes based on clear differences in gene structure and expression pattern, subcellular localization, enzymatic activity, and substrate specificity of the encoded proteins. Using site-directed mutagenesis, this study revealed that the divergence of the active site motif among different classes of GRX proteins resulted in substrate switches and thus provided new insights into the molecular evolution of these important plant enzymes.en_US
dc.description.departmentBiochemistryen_US
dc.description.departmentGeneticsen_US
dc.description.departmentMicrobiology and Plant Pathologyen_US
dc.description.librarianhj2023en_US
dc.description.sponsorshipChinese Academy of Forestry; National Natural Science Foundation of China; and Special Research Fund of Ghent University.en_US
dc.description.urihttps://onlinelibrary.wiley.com/journal/1365313xen_US
dc.identifier.citationXu, H., Li, Z., Jiang, P.-F. et al. 2022, 'Divergence of active site motifs among different classes of Populus glutaredoxins results in substrate switches', Plant Journal, vol. 110, no. 1, pp. 129-146, doi : 10.1111/tpj.15660.en_US
dc.identifier.issn0960-7412 (print)
dc.identifier.issn1365-313X (online)
dc.identifier.other10.1111/tpj.15660
dc.identifier.urihttp://hdl.handle.net/2263/91474
dc.language.isoenen_US
dc.publisherWileyen_US
dc.rights© 2022 Society for Experimental Biology and John Wiley & Sons Ltd. This is the pre-peer reviewed version of the following article : 'Divergence of active site motifs among different classes of Populus glutaredoxins results in substrate switches', Plant Journal, vol. 110, no. 1, pp. 129-146, 2022, doi : 10.1111/tpj.15660. The definite version is available at : https://onlinelibrary.wiley.com/journal/1365313x.en_US
dc.subjectActive site motifen_US
dc.subjectGene familyen_US
dc.subjectFunctional divergenceen_US
dc.subjectEnzymatic specificityen_US
dc.subjectPopulus trichocarpaen_US
dc.subjectGlutaredoxin (GRX)en_US
dc.titleDivergence of active site motifs among different classes of Populus glutaredoxins results in substrate switchesen_US
dc.typePostprint Articleen_US

Files

Original bundle

Now showing 1 - 5 of 10
Loading...
Thumbnail Image
Name:
Xu_Divergence_2022.pdf
Size:
2.71 MB
Format:
Adobe Portable Document Format
Description:
Postprint Article
Loading...
Thumbnail Image
Name:
Xu_DivergenceFigS1_2022.pdf
Size:
118.91 KB
Format:
Adobe Portable Document Format
Description:
Figure S1
Loading...
Thumbnail Image
Name:
Xu_DivergenceFigS2_2022.pdf
Size:
4.96 MB
Format:
Adobe Portable Document Format
Description:
Figure S2
Loading...
Thumbnail Image
Name:
Xu_DivergenceFigS3_2022.pdf
Size:
534.18 KB
Format:
Adobe Portable Document Format
Description:
Figure S3
Loading...
Thumbnail Image
Name:
Xu_DivergenceFigS4_2022.pdf
Size:
564.12 KB
Format:
Adobe Portable Document Format
Description:
Figure S4

License bundle

Now showing 1 - 1 of 1
Loading...
Thumbnail Image
Name:
license.txt
Size:
1.71 KB
Format:
Item-specific license agreed upon to submission
Description: